Issue 5:2 (2010) of the journal Applied Ontology is now online at www.applied-ontology.org. The issue features three high-quality papers:
- Ontological realism: Methodology or misdirection? / Gary H. Merrill (DOI 10.3233/AO-2010-0076)
- An ontological anaysis of states: Organizations vs. legal persons / E.H. Robinson (DOI 10.3233/AO-2010-0077)
- A note on ontology localization / P. Cimiano, E. Montiel-Ponsoda, P. Buitelaar, M. Espinoza and A. Gomez-Perez (DOI 10.3233/AO-2010-0075)
Given its relevance for the field of ontology engineering, the first paper Ontological realism: Methodology or misdirection? (DOI 10.3233/AO-2010-0076, Gary H. Merrill), an analysis of the implications of Ontological Realism from the applied ontology, has been made freely available online http://iospress.metapress.com/content/j3324564p5l33863/.
For several years, Barry Smith and Werner Cuesters have made the strong plea that ontologies should be developed from a realist perspective, such that the entities in an ontology refer directly to entities in reality. Smith and Cuesters have advocated the notion of realism quite forcefully in the biological community, where the OBO Foundry represents a collection of reference ontologies that adhere to a number of principles, among them the realist perspective. Smith and Cuesters have been extremely successful in persuading a large cadre of ontology developers to adhere to this point of view.
Merrill's article makes a head-on attack on Smith and Cuesters' approach, with strong arguments and strong wit. This paper is essential reading for anyone who is interested in the philosophical underpinnings of ontology engineering in general and in the OBO Foundry in particular.
Meanwhile, Barry Smith and Werner Cuesters are busy preparing a response to the paper by Merrill, which promises to make a head-on counterattack, with equally strong arguments and strong wit. Smith and Cuester's response to the Merrill paper will be published in the next issue of Applied Ontology.
Merrill has promised to respond to the rebuttal from Smith and Cuesters. Smith and Cuesters have already asked to refute Merrill's rebuttal.
This debate on the essence of ontology for e-science is fundamental and important to everyone concerned with the subject matter of the journal.